Pipeline Olympics: benchmarking of DNA methylation workflows
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Global Analysis
Consensus region analysis
Pairwise comparison analysis
Ranking
Ranking summary
Ranking summary plot
Methylation
Sample
Sample + Method
Method
Coverage
Sample
Sample + Method
Method
RainCloud distance
Workflow (absolute)
Stacked sample (absolute)
Sample type (absolute)
Sample (absolute)
Workflow (directional)
Stacked sample (directional)
Sample type (directional)
Sample (directional)
Violin distance
Average (absolute)
Summarized (absolute)
Region (absolute)
Sample (absolute)
Average (directional)
Region (directional)
Sample (directional)
Methylation
Region
Heatmap
Directional distance
Absolute distance
Methylation
Pairwise
Pairwise comparison analysis
Ranking
Global Coverage
Global Methylation
Consensus corridor distance
Sample type accuracy
Global depth of CpG coverage
Summary
Global summary
Sample type summary
Graphical summary
Graphical summary
Currently: Only available for package dataset